RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g15460.2 View Network Show in Genome Browser |
| Other Names | Os08g0254500 |
| Description | preprotein translocase subunit secY, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 9405688-9411734 Nucleotide Length: 1023 |
| Protein-coding | LOC_Os08g15460 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g60100 LOC_Os03g34040 LOC_Os03g03360 LOC_Os03g12020 LOC_Os01g15290 LOC_Os03g59310 LOC_Os03g48840 LOC_Os03g59720 LOC_Os03g26860 LOC_Os03g54040 LOC_Os03g24020 More.. |
| Downstream Genes | LOC_Os08g21840 LOC_Os12g42180 LOC_Os09g07910 LOC_Os09g19954 LOC_Os08g27090 LOC_Os12g04160 LOC_Os11g04370 LOC_Os10g41050 LOC_Os11g37510 LOC_Os12g30490 LOC_Os12g38000 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g15460.2 |
| Rice Genome Annotation | LOC_Os08g15460.2 |
| Ricechip | LOC_Os08g15460.2 |
| KEGG | osa:4345097 dosa:Os08t0254500-01 |
| Entrez-Gene | 4345097 |