RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g16480.3 View Network Show in Genome Browser |
| Other Names | Os08g0265500 |
| Description | ATPase, AFG1 family domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 10098182-10104094 Nucleotide Length: 1413 |
| Protein-coding | LOC_Os08g16480 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g38400 LOC_Os01g39260 LOC_Os06g07630 LOC_Os02g56000 LOC_Os01g39250 LOC_Os01g62500 LOC_Os01g46070 LOC_Os05g49880 LOC_Os07g43700 LOC_Os01g61380 LOC_Os03g56280 More.. |
| Downstream Genes | LOC_Os12g43630 LOC_Os08g33720 LOC_Os10g33800 LOC_Os08g44810 LOC_Os12g37590 LOC_Os08g34720 LOC_Os10g37690 LOC_Os10g40590 LOC_Os08g31460 LOC_Os09g08910 LOC_Os10g30580 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g16480.3 |
| Rice Genome Annotation | LOC_Os08g16480.3 |
| Ricechip | LOC_Os08g16480.3 |
| KEGG | osa:4345118 dosa:Os08t0265500-01 |
| Entrez-Gene | 4345118 |