RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g19610.1 View Network Show in Genome Browser |
| Other Names | Os08g0292600 |
| Description | peptidyl-prolyl cis-trans isomerase, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 11728223-11731525 Nucleotide Length: 984 |
| Protein-coding | LOC_Os08g19610 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g04960 LOC_Os07g29390 LOC_Os04g38640 |
| Downstream Genes | LOC_Os09g38420 LOC_Os10g32570 LOC_Os11g38990 LOC_Os10g06630 LOC_Os09g36670 LOC_Os08g29370 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1320-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g19610.1 |
| Rice Genome Annotation | LOC_Os08g19610.1 |
| Ricechip | LOC_Os08g19610.1 |
| KEGG | osa:4345190 dosa:Os08t0292600-02 |
| Entrez-Gene | 4345190 |