RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g19650.1 View Network Show in Genome Browser |
| Other Names | Os08g0292900 |
| Description | homeobox protein knotted-1, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 11758701-11765266 Nucleotide Length: 837 |
| Protein-coding | LOC_Os08g19650 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g58640 LOC_Os07g37640 LOC_Os01g63780 LOC_Os03g03260 LOC_Os08g08820 LOC_Os08g04190 LOC_Os07g08330 LOC_Os03g47740 LOC_Os04g53540 LOC_Os06g38470 LOC_Os07g03770 More.. |
| Downstream Genes | LOC_Os08g39070 LOC_Os11g02110 LOC_Os11g07500 LOC_Os12g02070 LOC_Os10g39030 LOC_Os12g43950 LOC_Os10g42490 LOC_Os10g02240 LOC_Os10g02260 LOC_Os10g22560 LOC_Os10g02220 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g19650.1 |
| Rice Genome Annotation | LOC_Os08g19650.1 |
| Ricechip | LOC_Os08g19650.1 |
| KEGG | osa:4345191 dosa:Os08t0292900-01 |
| Entrez-Gene | 4345191 |