RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g19850.1 View Network Show in Genome Browser |
| Other Names | Os08g0295300 |
| Description | threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 11887888-11897493 Nucleotide Length: 2238 |
| Protein-coding | LOC_Os08g19850 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g48510 LOC_Os02g01110 LOC_Os02g55120 LOC_Os06g43900 LOC_Os06g37180 LOC_Os01g51380 LOC_Os01g53280 LOC_Os05g45220 LOC_Os06g48750 LOC_Os05g05840 LOC_Os07g43470 More.. |
| Downstream Genes | LOC_Os12g34860 LOC_Os08g42560 LOC_Os10g10244 LOC_Os12g25710 LOC_Os10g26130 LOC_Os10g32550 LOC_Os11g39670 LOC_Os12g03720 LOC_Os11g03900 LOC_Os09g08910 LOC_Os10g42860 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 |
| Metacyc Pathways | TRNA-CHARGING-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g19850.1 |
| Rice Genome Annotation | LOC_Os08g19850.1 |
| Ricechip | LOC_Os08g19850.1 |
| KEGG | osa:4345200 dosa:Os08t0295300-01 |
| Entrez-Gene | 4345200 |