RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g20420.1 View Network Show in Genome Browser |
| Other Names | Os08g0299400 |
| Description | MGD2, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 12266091-12269671 Nucleotide Length: 1185 |
| Protein-coding | LOC_Os08g20420 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0007154 | cell communication | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009991 | response to extracellular stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g11260 LOC_Os02g04500 LOC_Os04g56970 |
| Downstream Genes | LOC_Os10g40130 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00561 rn01100 |
| Metacyc Pathways | PWY-401 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g20420.1 |
| Rice Genome Annotation | LOC_Os08g20420.1 |
| Ricechip | LOC_Os08g20420.1 |
| KEGG | osa:4345212 dosa:Os08t0299400-01 |
| Entrez-Gene | 4345212 |