RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g23110.1 View Network Show in Genome Browser |
| Other Names | Os08g0320000 |
| Description | tRNA synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 13919925-13925717 Nucleotide Length: 1143 |
| Protein-coding | LOC_Os08g23110 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g31610 LOC_Os01g54020 LOC_Os06g48750 LOC_Os02g05330 LOC_Os01g36920 LOC_Os01g36890 LOC_Os07g47580 LOC_Os04g36810 LOC_Os05g05740 LOC_Os07g10540 LOC_Os05g05840 More.. |
| Downstream Genes | LOC_Os09g38420 LOC_Os10g26660 LOC_Os11g20384 LOC_Os11g05730 LOC_Os10g10990 LOC_Os08g42560 LOC_Os09g20090 LOC_Os08g40610 LOC_Os08g40180 LOC_Os09g32274 LOC_Os09g31970 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2925 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 |
| Metacyc Pathways | TRNA-CHARGING-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g23110.1 |
| Rice Genome Annotation | LOC_Os08g23110.1 |
| Ricechip | LOC_Os08g23110.1 |
| KEGG | osa:9271247 dosa:Os08t0320000-01 |
| Entrez-Gene | 9271247 |