RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g25460.1 View Network Show in Genome Browser |
| Other Names | Os08g0343300 |
| Description | transcription initiation factor, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 15494238-15501850 Nucleotide Length: 1389 |
| Protein-coding | LOC_Os08g25460 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os08g25060 LOC_Os02g52940 LOC_Os03g01230 LOC_Os02g03340 LOC_Os04g42990 LOC_Os03g53190 LOC_Os03g06670 LOC_Os01g10050 LOC_Os04g25550 LOC_Os02g18380 LOC_Os03g14720 More.. |
| Downstream Genes | LOC_Os09g02284 LOC_Os10g10990 LOC_Os12g37370 LOC_Os10g27050 LOC_Os10g28230 LOC_Os10g41470 LOC_Os12g43370 LOC_Os08g31240 LOC_Os09g32976 LOC_Os09g17850 LOC_Os08g42910 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR414 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g25460.1 |
| Rice Genome Annotation | LOC_Os08g25460.1 |
| Ricechip | LOC_Os08g25460.1 |
| KEGG | osa:4345330 dosa:Os08t0343300-01 |
| Entrez-Gene | 4345330 |