RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g25570.1 View Network Show in Genome Browser |
| Other Names | Os08g0344100 |
| Description | histone deacetylase, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 15554139-15559152 Nucleotide Length: 1377 |
| Protein-coding | LOC_Os08g25570 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0040029 | regulation of gene expression, epigenetic | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os08g25200 LOC_Os05g32310 LOC_Os04g01130 LOC_Os07g38360 LOC_Os03g43890 LOC_Os02g14840 LOC_Os01g55200 LOC_Os06g08480 LOC_Os01g45990 LOC_Os01g11250 LOC_Os07g06980 More.. |
| Downstream Genes | LOC_Os11g34300 LOC_Os10g28040 LOC_Os11g32900 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g25570.1 |
| Rice Genome Annotation | LOC_Os08g25570.1 |
| Ricechip | LOC_Os08g25570.1 |
| KEGG | osa:4345332 dosa:Os08t0344100-01 |
| Entrez-Gene | 4345332 |