RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g29170.1 View Network Show in Genome Browser |
| Other Names | Os08g0379400 |
| Description | dehydrogenase, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 17855514-17857688 Nucleotide Length: 1173 |
| Protein-coding | LOC_Os08g29170 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g08999 LOC_Os02g42520 LOC_Os04g41960 LOC_Os01g66720 LOC_Os06g25439 LOC_Os01g07090 LOC_Os01g61400 LOC_Os05g43650 LOC_Os07g32880 LOC_Os08g02630 LOC_Os04g16680 More.. |
| Downstream Genes | LOC_Os10g29470 LOC_Os10g07229 LOC_Os09g23540 LOC_Os08g45190 LOC_Os11g10480 LOC_Os12g23180 LOC_Os11g32320 LOC_Os12g34890 LOC_Os10g37180 LOC_Os08g44810 |
| Pathways | |
|---|---|
| Metacyc Pathways | THREONINE-DEG2-PWY THRDLCTCAT-PWY PWY-5448 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g29170.1 |
| Rice Genome Annotation | LOC_Os08g29170.1 |
| Ricechip | LOC_Os08g29170.1 |
| KEGG | osa:4345439 dosa:Os08t0379400-01 |
| Entrez-Gene | 4345439 |