RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g29900.1 View Network Show in Genome Browser |
| Other Names | Os08g0388900 |
| Description | expressed protein |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 18371708-18372205 Nucleotide Length: 498 |
| Protein-coding | LOC_Os08g29900 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g51984 LOC_Os07g27790 LOC_Os05g03820 LOC_Os01g63840 LOC_Os02g47120 |
| Downstream Genes | LOC_Os12g33100 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00130 rn01100 rn01110 rn00860 rn00900 |
| Metacyc Pathways | PWY-5365 PWY-5133 PWY-5132 PWY-702 PWY-1422 PWY-5123 POLYISOPRENSYN-PWY PWY-5121 PWY-5122 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g29900.1 |
| Rice Genome Annotation | LOC_Os08g29900.1 |
| Ricechip | LOC_Os08g29900.1 |
| KEGG | osa:4345469 dosa:Os08t0388900-00 |
| Entrez-Gene | 4345469 |