RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g30910.1 View Network Show in Genome Browser |
| Other Names | Os08g0400200 |
| Description | YDG/SRA domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 19085505-19089497 Nucleotide Length: 3879 |
| Protein-coding | LOC_Os08g30910 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0040029 | regulation of gene expression, epigenetic | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g38470 LOC_Os03g43890 LOC_Os03g58400 LOC_Os07g08500 LOC_Os02g04490 LOC_Os06g06510 LOC_Os06g06460 LOC_Os05g36280 LOC_Os04g34240 LOC_Os01g64640 LOC_Os02g12380 More.. |
| Downstream Genes | LOC_Os10g17770 LOC_Os08g42600 LOC_Os11g32900 LOC_Os11g05730 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR416 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g30910.1 |
| Rice Genome Annotation | LOC_Os08g30910.1 |
| Ricechip | LOC_Os08g30910.1 |
| KEGG | osa:4345509 dosa:Os08t0400200-00 |
| Entrez-Gene | 4345509 |