RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g31240.1 View Network Show in Genome Browser |
| Other Names | Os08g0404400,Os08g0404350 |
| Description | FACT complex subunit SPT16, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 19314778-19318231 Nucleotide Length: 3135 |
| Protein-coding | LOC_Os08g31240 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g08970 LOC_Os05g08970 LOC_Os07g36500 LOC_Os05g39050 LOC_Os05g38740 LOC_Os04g49420 LOC_Os03g02780 LOC_Os02g45940 LOC_Os01g61920 LOC_Os07g02350 LOC_Os08g06070 More.. |
| Downstream Genes | LOC_Os10g39410 LOC_Os09g38020 LOC_Os09g26340 LOC_Os10g41520 LOC_Os12g35030 LOC_Os12g38970 LOC_Os12g34510 LOC_Os08g33100 LOC_Os11g05730 LOC_Os12g25120 LOC_Os08g38300 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2919 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g31240.1 |
| Rice Genome Annotation | LOC_Os08g31240.1 |
| Ricechip | LOC_Os08g31240.1 |
| KEGG | osa:9269672 dosa:Os08t0404400-01dosa:Os08t0404350-00 |
| Entrez-Gene | 9269672 |