RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g32080.1 View Network Show in Genome Browser |
| Other Names | Os08g0416000 |
| Description | CPuORF27 - conserved peptide uORF-containing transcript, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 19884332-19887863 Nucleotide Length: 1050 |
| Protein-coding | LOC_Os08g32080 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g35770 LOC_Os01g45570 LOC_Os04g45010 LOC_Os03g15940 LOC_Os02g02424 LOC_Os01g48170 LOC_Os02g42820 LOC_Os06g04870 LOC_Os03g12860 LOC_Os01g55549 LOC_Os05g50130 More.. |
| Downstream Genes | LOC_Os09g35910 LOC_Os10g35930 LOC_Os09g21180 LOC_Os10g31420 LOC_Os10g01470 LOC_Os10g31440 LOC_Os08g36220 LOC_Os09g27450 LOC_Os10g41230 LOC_Os10g31460 LOC_Os10g31490 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g32080.1 |
| Rice Genome Annotation | LOC_Os08g32080.1 |
| Ricechip | LOC_Os08g32080.1 |
| KEGG | osa:4345576 dosa:Os08t0416000-01 |
| Entrez-Gene | 4345576 |