RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os08g33488.1 View Network Show in Genome Browser
Other Names	Os08g0431900
Description	OsMADS23 - MADS-box family gene with MIKCc type-box, expressed
Gene Attributes	Chromosome: Chr8 CDS Coordinates (5'-3'): 20897215-20906881 Nucleotide Length: 480
Protein-coding	LOC_Os08g33488

Gene Ontology Classification
GO	Name	Type	Code
GO:0008150	biological_process	Biological Process	IEA
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0009791	post-embryonic development	Biological Process	IEA
GO:0009991	response to extracellular stimulus	Biological Process	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0005634	nucleus	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os07g01820 LOC_Os06g08380 LOC_Os01g55040 LOC_Os03g54160 LOC_Os06g27890 LOC_Os07g38950 LOC_Os07g41370 LOC_Os03g03610 LOC_Os02g04490 LOC_Os06g51270 LOC_Os04g35700 More..
Downstream Genes	LOC_Os11g10100 LOC_Os09g26180 LOC_Os08g41950 LOC_Os09g32948 LOC_Os11g40100 LOC_Os12g31350 LOC_Os09g12800 LOC_Os08g39080 LOC_Os12g07590 LOC_Os11g43640 LOC_Os10g38950 More..

miRNA Regulations
miRNAs	osa-miR444a-3p.1 osa-miR444d.1 osa-miR444a-3p.2 osa-miR444d.2 osa-miR444e osa-miR444f osa-miR444b.1 osa-miR444c.1 osa-miR444b.2 osa-miR444c.2

Database Links
Gramene	LOC_Os08g33488.1
Rice Genome Annotation	LOC_Os08g33488.1
Ricechip	LOC_Os08g33488.1
KEGG	osa:4345644 dosa:Os08t0431900-00
Entrez-Gene	4345644