RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g33830.2 View Network Show in Genome Browser |
| Other Names | Os08g0436000 |
| Description | polypyrimidine tract-binding protein, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 21173418-21179201 Nucleotide Length: 1086 |
| Protein-coding | LOC_Os08g33830 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009856 | pollination | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g07220 LOC_Os01g72890 LOC_Os06g40600 LOC_Os04g58640 LOC_Os02g39720 LOC_Os05g24970 LOC_Os01g59140 LOC_Os02g13990 LOC_Os03g50090 LOC_Os02g58090 LOC_Os02g14780 More.. |
| Downstream Genes | LOC_Os08g37960 LOC_Os10g06130 LOC_Os10g35550 LOC_Os11g43620 LOC_Os10g31900 LOC_Os10g10990 LOC_Os08g34480 LOC_Os09g20590 LOC_Os11g14430 LOC_Os12g18880 LOC_Os10g34520 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1847.1 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g33830.2 |
| Rice Genome Annotation | LOC_Os08g33830.2 |
| Ricechip | LOC_Os08g33830.2 |
| KEGG | osa:4345664 dosa:Os08t0436000-01 |
| Entrez-Gene | 4345664 |