RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os08g34950.1 View Network Show in Genome Browser
Other Names	Os08g0450800,Os08g0450700
Description	chaperonin Cpn60/TCP-1, putative, expressed
Gene Attributes	Chromosome: Chr8 CDS Coordinates (5'-3'): 22001127-22011881 Nucleotide Length: 5496
Protein-coding	LOC_Os08g34950

Gene Ontology Classification
GO	Name	Type	Code
GO:0016043	cellular component organization	Biological Process	IEA
GO:0016043	cellular component organization	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0006629	lipid metabolic	Biological Process	IEA
GO:0006629	lipid metabolic	Biological Process	IEA
GO:0007275	multicellular organismal development	Biological Process	IEA
GO:0007275	multicellular organismal development	Biological Process	IEA
GO:0007165	signal transduction	Biological Process	IEA
GO:0007165	signal transduction	Biological Process	IEA
GO:0005488	binding	Molecular Function	IEA
GO:0005488	binding	Molecular Function	IEA
GO:0016301	kinase activity	Molecular Function	IEA
GO:0016301	kinase activity	Molecular Function	IEA
GO:0008289	lipid binding	Molecular Function	IEA
GO:0008289	lipid binding	Molecular Function	IEA
GO:0005768	endosome	Cellular Component	IEA
GO:0005768	endosome	Cellular Component	IEA
GO:0005739	mitochondrion	Cellular Component	IEA
GO:0005739	mitochondrion	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os01g72320 LOC_Os04g58960 LOC_Os04g49430 LOC_Os03g12300 LOC_Os03g59020 LOC_Os04g46620 LOC_Os05g31920 LOC_Os05g05470 LOC_Os03g04970 LOC_Os02g22780 LOC_Os03g24170 More..
Downstream Genes	LOC_Os10g32550 LOC_Os10g37060 LOC_Os12g04700 LOC_Os11g04840 LOC_Os12g21798 LOC_Os08g43540 LOC_Os09g36710 LOC_Os09g17840 LOC_Os09g17830 LOC_Os09g26880 LOC_Os09g32532 More..

miRNA Regulations
miRNAs	osa-miR395c

Database Links
Gramene	LOC_Os08g34950.1
Rice Genome Annotation	LOC_Os08g34950.1
Ricechip	LOC_Os08g34950.1
KEGG	osa:4345725 osa:4345724 dosa:Os08t0450800-01 dosa:Os08t0450700-01
Entrez-Gene	4345725