RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g37320.1 View Network Show in Genome Browser |
| Other Names | Os08g0478200 |
| Description | expressed protein |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 23579251-23582179 Nucleotide Length: 510 |
| Protein-coding | LOC_Os08g37320 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g19890 LOC_Os01g46070 LOC_Os05g47980 LOC_Os02g57180 LOC_Os03g40920 LOC_Os05g22940 LOC_Os07g45090 LOC_Os04g32660 LOC_Os03g27290 LOC_Os03g38520 LOC_Os03g56300 More.. |
| Downstream Genes | LOC_Os08g44250 LOC_Os10g42840 LOC_Os09g19734 LOC_Os11g06340 LOC_Os11g06330 LOC_Os10g32870 LOC_Os12g23200 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Pathways | |
|---|---|
| KEGG Pathways | rn01100 rn00680 rn00190 rn00195 |
| Metacyc Pathways | PWY-6126 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g37320.1 |
| Rice Genome Annotation | LOC_Os08g37320.1 |
| Ricechip | LOC_Os08g37320.1 |
| KEGG | osa:4345839 dosa:Os08t0478200-01 |
| Entrez-Gene | 4345839 |