RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g37580.1 View Network Show in Genome Browser |
| Other Names | Os08g0481400 |
| Description | homeobox associated leucine zipper, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 23803380-23805452 Nucleotide Length: 810 |
| Protein-coding | LOC_Os08g37580 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g14270 LOC_Os06g42000 LOC_Os03g61670 LOC_Os06g06090 LOC_Os03g17700 LOC_Os05g49170 LOC_Os02g57010 LOC_Os02g09940 LOC_Os08g06060 LOC_Os03g02240 LOC_Os06g08090 More.. |
| Downstream Genes | LOC_Os10g23204 LOC_Os08g42590 LOC_Os10g38950 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g37580.1 |
| Rice Genome Annotation | LOC_Os08g37580.1 |
| Ricechip | LOC_Os08g37580.1 |
| KEGG | osa:4345854 dosa:Os08t0481400-01 |
| Entrez-Gene | 4345854 |