RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g37790.1 View Network Show in Genome Browser |
| Other Names | Os08g0484500 |
| Description | phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 23934856-23938888 Nucleotide Length: 1518 |
| Protein-coding | LOC_Os08g37790 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g63020 LOC_Os03g06740 LOC_Os02g42190 LOC_Os02g42160 LOC_Os02g56850 LOC_Os01g26210 LOC_Os04g03830 LOC_Os07g12850 LOC_Os02g42150 LOC_Os03g39150 LOC_Os02g45130 More.. |
| Downstream Genes | LOC_Os10g28000 LOC_Os12g14610 LOC_Os12g14480 LOC_Os09g19510 LOC_Os12g37980 LOC_Os12g30180 LOC_Os12g02810 LOC_Os11g02830 LOC_Os08g39590 LOC_Os09g18159 LOC_Os12g06490 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00400 rn01100 rn01110 |
| Metacyc Pathways | ARO-PWY PWY-6164 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g37790.1 |
| Rice Genome Annotation | LOC_Os08g37790.1 |
| Ricechip | LOC_Os08g37790.1 |
| KEGG | osa:4345872 dosa:Os08t0484500-01 |
| Entrez-Gene | 4345872 |