RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g37940.1 View Network Show in Genome Browser |
| Other Names | Os08g0485900 |
| Description | HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 24023501-24027173 Nucleotide Length: 975 |
| Protein-coding | LOC_Os08g37940 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g02420 LOC_Os02g07490 LOC_Os01g57910 LOC_Os01g33050 LOC_Os07g19190 LOC_Os06g11280 LOC_Os06g11240 LOC_Os06g11210 LOC_Os06g45590 LOC_Os03g58810 LOC_Os06g11200 More.. |
| Downstream Genes | LOC_Os12g37630 LOC_Os12g41590 LOC_Os11g42160 LOC_Os10g42960 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2098-5p |
| Pathways | |
|---|---|
| Metacyc Pathways | PWY-181 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g37940.1 |
| Rice Genome Annotation | LOC_Os08g37940.1 |
| Ricechip | LOC_Os08g37940.1 |
| KEGG | osa:4345881 dosa:Os08t0485900-01 |
| Entrez-Gene | 4345881 |