RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g38580.1 View Network Show in Genome Browser |
| Other Names | Os08g0494000 |
| Description | harpin-induced protein 1 domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 24389390-24390462 Nucleotide Length: 699 |
| Protein-coding | LOC_Os08g38580 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g34720 LOC_Os05g30490 LOC_Os05g11010 LOC_Os04g58850 LOC_Os04g58090 LOC_Os03g15630 LOC_Os02g16030 LOC_Os01g64450 LOC_Os01g53470 |
| Downstream Genes | LOC_Os12g06260 LOC_Os12g02700 LOC_Os11g05870 LOC_Os11g02730 LOC_Os08g44410 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR414 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g38580.1 |
| Rice Genome Annotation | LOC_Os08g38580.1 |
| Ricechip | LOC_Os08g38580.1 |
| KEGG | osa:4345917 dosa:Os08t0494000-01 |
| Entrez-Gene | 4345917 |