RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g38780.1 View Network Show in Genome Browser |
| Other Names | Os08g0496500 |
| Description | core histone H2A/H2B/H3/H4, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 24517598-24518572 Nucleotide Length: 618 |
| Protein-coding | LOC_Os08g38780 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g38820 LOC_Os08g09690 LOC_Os01g61810 LOC_Os08g33100 LOC_Os07g36140 LOC_Os08g29500 LOC_Os03g51200 LOC_Os07g36130 LOC_Os05g49780 LOC_Os06g06510 LOC_Os06g06460 More.. |
| Downstream Genes | LOC_Os12g34510 LOC_Os12g25120 LOC_Os11g34200 LOC_Os11g05730 LOC_Os10g39410 LOC_Os09g38020 LOC_Os09g26340 LOC_Os10g28230 LOC_Os12g41880 LOC_Os09g39490 LOC_Os12g30060 More.. |
| Reference | |
|---|---|
| PubMed | 18193457 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g38780.1 |
| Rice Genome Annotation | LOC_Os08g38780.1 |
| Ricechip | LOC_Os08g38780.1 |
| KEGG | osa:4345928 dosa:Os08t0496500-01 |
| Entrez-Gene | 4345928 |