RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g38900.1 View Network Show in Genome Browser |
| Other Names | Os08g0498100 |
| Description | caffeoyl-CoA O-methyltransferase, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 24586503-24588071 Nucleotide Length: 759 |
| Protein-coding | LOC_Os08g38900 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0019748 | secondary metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g60090 LOC_Os01g09010 LOC_Os03g52630 LOC_Os03g59020 LOC_Os08g10600 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00360 rn00940 rn00941 rn00945 rn01100 rn01110 |
| Metacyc Pathways | PWY-361 PWY-1121 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g38900.1 |
| Rice Genome Annotation | LOC_Os08g38900.1 |
| Ricechip | LOC_Os08g38900.1 |
| KEGG | osa:4345934 dosa:Os08t0498100-01 |
| Entrez-Gene | 4345934 |