RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g39070.1 View Network Show in Genome Browser |
| Other Names | Os08g0500000 |
| Description | COP9 signalosome complex subunit 6a, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 24681103-24684529 Nucleotide Length: 990 |
| Protein-coding | LOC_Os08g39070 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g46490 LOC_Os04g30780 LOC_Os05g30800 LOC_Os01g16190 LOC_Os04g56070 LOC_Os01g31470 LOC_Os02g46130 LOC_Os06g48600 LOC_Os05g07050 LOC_Os05g24970 LOC_Os02g46990 More.. |
| Downstream Genes | LOC_Os10g42320 LOC_Os12g01680 LOC_Os11g01600 LOC_Os11g05562 LOC_Os09g29970 LOC_Os11g38900 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g39070.1 |
| Rice Genome Annotation | LOC_Os08g39070.1 |
| Ricechip | LOC_Os08g39070.1 |
| KEGG | osa:4345944 dosa:Os08t0500000-01 |
| Entrez-Gene | 4345944 |