RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g39080.2 View Network Show in Genome Browser |
| Other Names | Os08g0500100 |
| Description | tetratricopeptide repeat domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 24685246-24694534 Nucleotide Length: 2040 |
| Protein-coding | LOC_Os08g39080 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005777 | peroxisome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g19480 LOC_Os02g14790 LOC_Os03g57210 LOC_Os07g41800 LOC_Os07g05810 LOC_Os06g01390 LOC_Os04g52690 LOC_Os08g33082 LOC_Os02g43020 LOC_Os05g03910 LOC_Os01g43030 More.. |
| Downstream Genes | LOC_Os10g32960 LOC_Os08g44240 LOC_Os08g41730 LOC_Os09g32800 LOC_Os10g34540 LOC_Os12g41190 LOC_Os09g36740 LOC_Os11g16540 LOC_Os10g31950 LOC_Os11g05090 LOC_Os08g41390 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g39080.2 |
| Rice Genome Annotation | LOC_Os08g39080.2 |
| Ricechip | LOC_Os08g39080.2 |
| KEGG | osa:4345945 dosa:Os08t0500100-02 |
| Entrez-Gene | 4345945 |