RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g39140.3 View Network Show in Genome Browser |
| Other Names | Os08g0500700 |
| Description | heat shock protein, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 24719101-24723553 Nucleotide Length: 1845 |
| Protein-coding | LOC_Os08g39140 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g43020 LOC_Os04g45480 LOC_Os03g16860 LOC_Os05g38530 LOC_Os01g62290 LOC_Os05g48810 LOC_Os08g36150 LOC_Os03g60620 LOC_Os03g16920 LOC_Os03g44620 LOC_Os04g02820 More.. |
| Downstream Genes | LOC_Os11g47760 LOC_Os09g30418 LOC_Os09g30412 LOC_Os11g04070 LOC_Os12g03880 LOC_Os09g33780 LOC_Os10g32550 LOC_Os12g25710 LOC_Os10g22380 LOC_Os12g24080 LOC_Os11g14220 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1877 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g39140.3 |
| Rice Genome Annotation | LOC_Os08g39140.3 |
| Ricechip | LOC_Os08g39140.3 |
| KEGG | osa:4345951 dosa:Os08t0500700-01 |
| Entrez-Gene | 4345951 |