RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g39170.1 View Network Show in Genome Browser |
| Other Names | Os08g0501000 |
| Description | expressed protein |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 24734910-24738361 Nucleotide Length: 1854 |
| Protein-coding | LOC_Os08g39170 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g05630 LOC_Os06g48300 LOC_Os06g33549 LOC_Os04g56450 LOC_Os07g32380 LOC_Os04g37904 LOC_Os06g33530 LOC_Os04g52000 LOC_Os02g55560 LOC_Os06g44210 LOC_Os02g15594 More.. |
| Downstream Genes | LOC_Os10g39540 LOC_Os09g30100 LOC_Os09g32810 LOC_Os09g38550 LOC_Os11g13820 LOC_Os10g41480 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g39170.1 |
| Rice Genome Annotation | LOC_Os08g39170.1 |
| Ricechip | LOC_Os08g39170.1 |
| KEGG | osa:4345954 dosa:Os08t0501000-00 |
| Entrez-Gene | 4345954 |