RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g39300.1 View Network Show in Genome Browser |
| Other Names | Os08g0502700 |
| Description | aminotransferase, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 24828110-24830865 Nucleotide Length: 1209 |
| Protein-coding | LOC_Os08g39300 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005777 | peroxisome | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g06200 LOC_Os06g45860 LOC_Os01g18640 LOC_Os04g43650 LOC_Os07g09060 LOC_Os03g54091 LOC_Os02g08130 LOC_Os01g18660 LOC_Os08g10600 LOC_Os01g01080 LOC_Os01g53450 More.. |
| Downstream Genes | LOC_Os09g16910 LOC_Os12g18900 LOC_Os10g41150 LOC_Os09g33520 LOC_Os09g02700 LOC_Os12g13320 LOC_Os08g42420 LOC_Os08g41390 LOC_Os09g36930 LOC_Os10g23120 LOC_Os12g43660 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00260 rn01100 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g39300.1 |
| Rice Genome Annotation | LOC_Os08g39300.1 |
| Ricechip | LOC_Os08g39300.1 |
| KEGG | osa:4345962 dosa:Os08t0502700-01 |
| Entrez-Gene | 4345962 |