RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g39600.1 View Network Show in Genome Browser |
| Other Names | Os08g0506500 |
| Description | RNA methyltransferase, TrmH family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 25064640-25066853 Nucleotide Length: 843 |
| Protein-coding | LOC_Os08g39600 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0007154 | cell communication | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009991 | response to extracellular stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g40700 LOC_Os05g04940 LOC_Os03g48050 LOC_Os03g01110 LOC_Os01g53890 LOC_Os02g40500 LOC_Os02g43180 LOC_Os04g42930 LOC_Os06g12030 LOC_Os06g44910 LOC_Os01g27140 More.. |
| Downstream Genes | LOC_Os08g45140 LOC_Os12g35340 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g39600.1 |
| Rice Genome Annotation | LOC_Os08g39600.1 |
| Ricechip | LOC_Os08g39600.1 |
| KEGG | osa:4345983 dosa:Os08t0506500-00 |
| Entrez-Gene | 4345983 |