RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g39820.1 View Network Show in Genome Browser |
| Other Names | Os08g0508600 |
| Description | pre-rRNA-processing protein TSR2, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 25206758-25210102 Nucleotide Length: 597 |
| Protein-coding | LOC_Os08g39820 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g45360 LOC_Os08g31810 LOC_Os05g05220 LOC_Os05g48422 LOC_Os02g37870 LOC_Os05g39960 LOC_Os06g12990 LOC_Os02g38060 LOC_Os02g49780 LOC_Os03g22350 LOC_Os01g60790 More.. |
| Downstream Genes | LOC_Os11g19250 LOC_Os11g01420 LOC_Os12g01430 LOC_Os11g16480 LOC_Os10g35280 LOC_Os10g17454 LOC_Os10g10434 LOC_Os12g04010 LOC_Os12g09280 LOC_Os12g31380 LOC_Os09g35670 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g39820.1 |
| Rice Genome Annotation | LOC_Os08g39820.1 |
| Ricechip | LOC_Os08g39820.1 |
| KEGG | osa:4345991 dosa:Os08t0508600-01 |
| Entrez-Gene | 4345991 |