RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g39850.3 View Network Show in Genome Browser |
| Other Names | Os08g0509100 |
| Description | lipoxygenase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 25244414-25250279 Nucleotide Length: 735 |
| Protein-coding | LOC_Os08g39850 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g21620 LOC_Os07g48290 LOC_Os05g01360 LOC_Os02g17534 LOC_Os01g73310 LOC_Os03g16950 LOC_Os05g01600 |
| Downstream Genes | LOC_Os09g15760 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g39850.3 |
| Rice Genome Annotation | LOC_Os08g39850.3 |
| Ricechip | LOC_Os08g39850.3 |
| KEGG | osa:4345994 dosa:Os08t0509100-01 |
| Entrez-Gene | 4345994 |