RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g40140.1 View Network Show in Genome Browser |
| Other Names | Os08g0512300 |
| Description | geranylgeranyl transferase type-2 subunit beta, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 25401248-25404642 Nucleotide Length: 960 |
| Protein-coding | LOC_Os08g40140 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g04710 LOC_Os01g53600 LOC_Os06g46380 LOC_Os02g04690 LOC_Os03g46390 LOC_Os03g18580 LOC_Os03g18570 LOC_Os01g08450 LOC_Os02g43690 LOC_Os05g27940 LOC_Os02g40880 More.. |
| Downstream Genes | LOC_Os09g33930 LOC_Os11g08569 LOC_Os12g43550 LOC_Os11g18194 LOC_Os11g35710 LOC_Os11g18366 LOC_Os10g32550 LOC_Os11g05562 LOC_Os08g44480 LOC_Os09g15790 LOC_Os09g39540 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g40140.1 |
| Rice Genome Annotation | LOC_Os08g40140.1 |
| Ricechip | LOC_Os08g40140.1 |
| KEGG | osa:4346013 dosa:Os08t0512300-01 |
| Entrez-Gene | 4346013 |