RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g40180.1 View Network Show in Genome Browser |
| Other Names | Os08g0512700 |
| Description | 3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 25426651-25431502 Nucleotide Length: 1686 |
| Protein-coding | LOC_Os08g40180 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g12900 LOC_Os02g32490 LOC_Os01g11300 LOC_Os03g12910 LOC_Os04g33190 LOC_Os01g11340 LOC_Os01g11270 LOC_Os01g11280 LOC_Os02g01920 LOC_Os03g02710 LOC_Os02g54110 More.. |
| Downstream Genes | LOC_Os11g32240 LOC_Os10g37420 LOC_Os09g07830 LOC_Os09g34960 LOC_Os08g43170 LOC_Os12g43670 LOC_Os09g36520 LOC_Os11g47730 LOC_Os09g31970 LOC_Os10g25780 LOC_Os10g18220 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2102-5p |
| Pathways | |
|---|---|
| KEGG Pathways | rn00900 rn01100 rn01110 |
| Metacyc Pathways | PWY-922 PWY-5074 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g40180.1 |
| Rice Genome Annotation | LOC_Os08g40180.1 |
| Ricechip | LOC_Os08g40180.1 |
| KEGG | osa:4346017 dosa:Os08t0512700-01 |
| Entrez-Gene | 4346017 |