RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g40260.1 View Network Show in Genome Browser |
| Other Names | Os08g0513700 |
| Description | OsSPL15 - SBP-box gene family member, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 25481919-25487545 Nucleotide Length: 3423 |
| Protein-coding | LOC_Os08g40260 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g25850 |
| Downstream Genes | LOC_Os10g25780 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2919 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g40260.1 |
| Rice Genome Annotation | LOC_Os08g40260.1 |
| Ricechip | LOC_Os08g40260.1 |
| KEGG | osa:4346023 dosa:Os08t0513700-01 |
| Entrez-Gene | 4346023 |