RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g40610.1 View Network Show in Genome Browser |
| Other Names | Os08g0517900 |
| Description | 30S ribosomal protein S16, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 25702617-25704363 Nucleotide Length: 414 |
| Protein-coding | LOC_Os08g40610 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os08g27090 LOC_Os07g49150 LOC_Os05g49130 LOC_Os03g18690 LOC_Os02g11030 LOC_Os02g32400 LOC_Os02g43600 LOC_Os01g56600 LOC_Os05g43390 LOC_Os04g56646 LOC_Os03g63430 More.. |
| Downstream Genes | LOC_Os11g05552 LOC_Os11g05556 LOC_Os09g36710 LOC_Os08g43540 LOC_Os12g16350 LOC_Os12g34550 LOC_Os12g10580 LOC_Os08g45040 LOC_Os11g40140 LOC_Os09g07910 LOC_Os10g38660 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1320-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g40610.1 |
| Rice Genome Annotation | LOC_Os08g40610.1 |
| Ricechip | LOC_Os08g40610.1 |
| KEGG | osa:4346044 dosa:Os08t0517900-01 |
| Entrez-Gene | 4346044 |