RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g40820.3 View Network Show in Genome Browser |
| Other Names | Os08g0519600 |
| Description | expressed protein |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 25817761-25823321 Nucleotide Length: 939 |
| Protein-coding | LOC_Os08g40820 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g43374 LOC_Os07g06970 LOC_Os07g34598 LOC_Os04g14410 LOC_Os03g19520 LOC_Os07g38060 LOC_Os03g18210 LOC_Os03g48840 LOC_Os03g03560 LOC_Os02g51810 LOC_Os04g54840 More.. |
| Downstream Genes | LOC_Os09g37700 LOC_Os09g35000 LOC_Os09g37270 LOC_Os09g30200 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR414 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g40820.3 |
| Rice Genome Annotation | LOC_Os08g40820.3 |
| Ricechip | LOC_Os08g40820.3 |
| KEGG | osa:4346057 dosa:Os08t0519600-01 |
| Entrez-Gene | 4346057 |