RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g40830.3 View Network Show in Genome Browser |
| Other Names | Os08g0519800 |
| Description | pumilio domain-containing protein PPD1, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 25836751-25844594 Nucleotide Length: 3021 |
| Protein-coding | LOC_Os08g40830 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g04050 LOC_Os02g04040 LOC_Os01g68760 LOC_Os03g04520 LOC_Os02g01740 LOC_Os07g48160 LOC_Os01g13530 LOC_Os02g21240 LOC_Os01g16870 LOC_Os02g19150 LOC_Os03g16080 More.. |
| Downstream Genes | LOC_Os12g44390 LOC_Os12g31350 LOC_Os10g25110 LOC_Os10g42960 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g40830.3 |
| Rice Genome Annotation | LOC_Os08g40830.3 |
| Ricechip | LOC_Os08g40830.3 |
| KEGG | osa:4346059 dosa:Os08t0519800-02 |
| Entrez-Gene | 4346059 |