RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g40860.1 View Network Show in Genome Browser |
| Other Names | Os08g0520100 |
| Description | RNA pseudouridine synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 25853729-25857347 Nucleotide Length: 1428 |
| Protein-coding | LOC_Os08g40860 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os08g23430 LOC_Os07g44940 LOC_Os03g22950 LOC_Os05g31290 LOC_Os07g12150 LOC_Os03g63930 LOC_Os03g51520 LOC_Os04g55060 LOC_Os05g49290 LOC_Os02g30060 LOC_Os03g18590 More.. |
| Downstream Genes | LOC_Os11g34850 LOC_Os11g34770 LOC_Os08g43580 LOC_Os09g36860 LOC_Os12g34890 LOC_Os11g31900 LOC_Os11g37900 LOC_Os12g13930 LOC_Os10g09860 LOC_Os10g28060 LOC_Os10g33370 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5150-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g40860.1 |
| Rice Genome Annotation | LOC_Os08g40860.1 |
| Ricechip | LOC_Os08g40860.1 |
| KEGG | osa:4346062 dosa:Os08t0520100-01 |
| Entrez-Gene | 4346062 |