RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os08g40900.1 View Network Show in Genome Browser
Other Names	Os08g0520550,Os08g0520500
Description	auxin response factor, putative, expressed
Gene Attributes	Chromosome: Chr8 CDS Coordinates (5'-3'): 25870712-25877493 Nucleotide Length: 3351
Protein-coding	LOC_Os08g40900

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0040007	growth	Biological Process	IEA
GO:0040007	growth	Biological Process	IEA
GO:0007275	multicellular organismal development	Biological Process	IEA
GO:0007275	multicellular organismal development	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0009791	post-embryonic development	Biological Process	IEA
GO:0009791	post-embryonic development	Biological Process	IEA
GO:0009628	response to abiotic stimulus	Biological Process	IEA
GO:0009628	response to abiotic stimulus	Biological Process	IEA
GO:0009719	response to endogenous stimulus	Biological Process	IEA
GO:0009719	response to endogenous stimulus	Biological Process	IEA
GO:0007165	signal transduction	Biological Process	IEA
GO:0007165	signal transduction	Biological Process	IEA
GO:0009606	tropism	Biological Process	IEA
GO:0009606	tropism	Biological Process	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0005634	nucleus	Cellular Component	IEA
GO:0005634	nucleus	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os08g31460 LOC_Os05g39240 LOC_Os01g61550 LOC_Os01g61510 LOC_Os01g65000 LOC_Os03g62200 LOC_Os02g34580 LOC_Os07g41590 LOC_Os03g53500 LOC_Os01g27630
Downstream Genes	LOC_Os09g35790 LOC_Os08g43334 LOC_Os12g01420 LOC_Os11g11730

Database Links
Gramene	LOC_Os08g40900.1
Rice Genome Annotation	LOC_Os08g40900.1
Ricechip	LOC_Os08g40900.1
KEGG	osa:4346065 dosa:Os08t0520550-01 dosa:Os08t0520500-01