RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g40930.1 View Network Show in Genome Browser |
| Other Names | Os08g0520900 |
| Description | Alpha amylase, catalytic domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 25892391-25900576 Nucleotide Length: 2412 |
| Protein-coding | LOC_Os08g40930 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g26234 LOC_Os06g51084 LOC_Os02g32660 LOC_Os04g33460 LOC_Os02g52710 LOC_Os04g33040 LOC_Os02g52700 LOC_Os01g51754 LOC_Os05g45720 LOC_Os02g56320 LOC_Os07g22930 More.. |
| Downstream Genes | LOC_Os12g02120 LOC_Os11g02180 LOC_Os10g30156 LOC_Os09g12660 LOC_Os09g23370 LOC_Os10g40260 LOC_Os12g37650 LOC_Os09g37020 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00500 rn01100 rn01110 |
| Metacyc Pathways | GLYCOGENSYNTH-PWY PWY-622 PWY-5067 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g40930.1 |
| Rice Genome Annotation | LOC_Os08g40930.1 |
| Ricechip | LOC_Os08g40930.1 |
| KEGG | osa:4346068 dosa:Os08t0520900-00 |
| Entrez-Gene | 4346068 |