RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g41270.1 View Network Show in Genome Browser |
| Other Names | Os08g0524100 |
| Description | endonuclease/exonuclease/phosphatase family domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 26062466-26069841 Nucleotide Length: 3324 |
| Protein-coding | LOC_Os08g41270 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0009991 | response to extracellular stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g08190 LOC_Os01g42060 LOC_Os02g18820 LOC_Os02g13110 LOC_Os06g02160 LOC_Os06g15410 LOC_Os05g14170 LOC_Os01g13730 LOC_Os03g13970 LOC_Os01g66270 |
| Downstream Genes | LOC_Os12g42150 LOC_Os12g18200 LOC_Os10g26140 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR172d-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g41270.1 |
| Rice Genome Annotation | LOC_Os08g41270.1 |
| Ricechip | LOC_Os08g41270.1 |
| KEGG | osa:4346083 dosa:Os08t0524100-01 |
| Entrez-Gene | 4346083 |