RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g41950.1 View Network Show in Genome Browser |
| Other Names | Os08g0531700 |
| Description | OsMADS7 - MADS-box family gene with MIKCc type-box, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 26507180-26512256 Nucleotide Length: 933 |
| Protein-coding | LOC_Os08g41950 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g11414 LOC_Os01g10504 LOC_Os07g01820 LOC_Os03g54160 LOC_Os08g33488 LOC_Os02g52340 LOC_Os06g11330 LOC_Os02g36924 LOC_Os01g69920 LOC_Os02g49840 LOC_Os04g23910 More.. |
| Downstream Genes | LOC_Os09g32948 LOC_Os11g10070 LOC_Os11g10060 LOC_Os11g29380 LOC_Os09g39260 LOC_Os09g39230 LOC_Os11g40100 LOC_Os12g31350 LOC_Os12g37400 LOC_Os09g12800 LOC_Os12g10540 More.. |
| Reference | |
|---|---|
| PubMed | 20003164 17640358 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g41950.1 |
| Rice Genome Annotation | LOC_Os08g41950.1 |
| Ricechip | LOC_Os08g41950.1 |
| KEGG | osa:4346134 dosa:Os08t0531700-01 |
| Entrez-Gene | 4346134 |