RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g41990.1 View Network Show in Genome Browser |
| Other Names | Os08g0532200 |
| Description | aminotransferase, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 26531391-26534074 Nucleotide Length: 1437 |
| Protein-coding | LOC_Os08g41990 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g21900 LOC_Os08g14770 LOC_Os06g22690 LOC_Os02g33450 LOC_Os03g45400 LOC_Os03g31150 LOC_Os02g08380 LOC_Os02g07230 LOC_Os08g28230 LOC_Os03g22780 LOC_Os05g38170 More.. |
| Downstream Genes | LOC_Os11g26160 LOC_Os12g17910 LOC_Os12g02380 LOC_Os09g10760 LOC_Os11g02450 LOC_Os12g35630 LOC_Os12g35580 LOC_Os12g34890 LOC_Os09g32030 LOC_Os11g34940 LOC_Os09g15820 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00250 rn00410 rn00650 rn01100 rn00640 rn00860 rn01110 |
| Metacyc Pathways | GLUDEG-I-PWY PWY-6535 PWY-6537 PWY-6536 PWY-5022 BETA-ALA-DEGRADATION-I-PWY PWY-4321 PWY-5188 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g41990.1 |
| Rice Genome Annotation | LOC_Os08g41990.1 |
| Ricechip | LOC_Os08g41990.1 |
| KEGG | osa:4346136 dosa:Os08t0532200-01 |
| Entrez-Gene | 4346136 |