RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g42020.2 View Network Show in Genome Browser |
| Other Names | Os08g0532500 |
| Description | zinc ion binding protein, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 26543220-26545786 Nucleotide Length: 1722 |
| Protein-coding | LOC_Os08g42020 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g32510 LOC_Os03g45410 LOC_Os03g42050 LOC_Os01g27940 LOC_Os06g40110 LOC_Os03g28960 LOC_Os04g32350 LOC_Os04g41490 LOC_Os01g68440 LOC_Os08g16780 LOC_Os03g13480 More.. |
| Downstream Genes | LOC_Os12g39070 LOC_Os10g29660 LOC_Os12g39830 LOC_Os12g30020 LOC_Os11g08940 LOC_Os12g31810 LOC_Os09g29100 LOC_Os10g41430 LOC_Os08g42600 LOC_Os11g10130 LOC_Os10g33710 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1846a-3p osa-miR1846b-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g42020.2 |
| Rice Genome Annotation | LOC_Os08g42020.2 |
| Ricechip | LOC_Os08g42020.2 |
| KEGG | osa:4346139 dosa:Os08t0532500-01 |
| Entrez-Gene | 4346139 |