RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g42410.1 View Network Show in Genome Browser |
| Other Names | Os08g0536000 |
| Description | transketolase, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 26777982-26783299 Nucleotide Length: 1125 |
| Protein-coding | LOC_Os08g42410 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g50620 LOC_Os06g13720 LOC_Os04g02900 LOC_Os06g01630 LOC_Os02g01500 LOC_Os07g22720 LOC_Os06g30460 LOC_Os08g33440 LOC_Os06g04270 LOC_Os07g49520 LOC_Os04g58110 More.. |
| Downstream Genes | LOC_Os09g24320 LOC_Os12g08170 LOC_Os11g33240 LOC_Os12g08260 LOC_Os10g41370 LOC_Os12g39340 LOC_Os10g25130 LOC_Os09g30418 LOC_Os09g30412 LOC_Os12g41250 LOC_Os12g43630 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00010 rn00020 rn00620 rn00650 rn01110 rn01120 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g42410.1 |
| Rice Genome Annotation | LOC_Os08g42410.1 |
| Ricechip | LOC_Os08g42410.1 |
| KEGG | osa:4346159 dosa:Os08t0536000-01 |
| Entrez-Gene | 4346159 |