RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g42530.1 View Network Show in Genome Browser |
| Other Names | Os08g0537600 |
| Description | SFC, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 26871277-26879986 Nucleotide Length: 2496 |
| Protein-coding | LOC_Os08g42530 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0030234 | enzyme regulator activity | Molecular Function | IEA | |
| GO:0008289 | lipid binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005794 | Golgi apparatus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g49330 LOC_Os03g18010 LOC_Os05g03610 LOC_Os08g14320 LOC_Os08g41830 |
| Downstream Genes | LOC_Os12g37560 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1871 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g42530.1 |
| Rice Genome Annotation | LOC_Os08g42530.1 |
| Ricechip | LOC_Os08g42530.1 |
| KEGG | osa:4346168 dosa:Os08t0537600-01 |
| Entrez-Gene | 4346168 |