RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g42840.1 View Network Show in Genome Browser |
| Other Names | Os08g0541300 |
| Description | leucine rich repeat protein, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 27086410-27089863 Nucleotide Length: 2823 |
| Protein-coding | LOC_Os08g42840 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os08g09640 LOC_Os06g38730 LOC_Os03g46600 LOC_Os06g38930 LOC_Os06g38670 LOC_Os02g11980 LOC_Os08g09450 LOC_Os02g01800 LOC_Os06g38650 LOC_Os06g38590 LOC_Os06g38780 More.. |
| Downstream Genes | LOC_Os11g41100 LOC_Os11g36090 LOC_Os11g36150 LOC_Os11g36140 LOC_Os12g42520 LOC_Os11g36160 LOC_Os11g36180 LOC_Os11g07100 LOC_Os11g29790 LOC_Os10g19160 LOC_Os10g22890 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR6248 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g42840.1 |
| Rice Genome Annotation | LOC_Os08g42840.1 |
| Ricechip | LOC_Os08g42840.1 |
| KEGG | osa:4346191 dosa:Os08t0541300-01 |
| Entrez-Gene | 4346191 |