RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g42850.1 View Network Show in Genome Browser |
| Other Names | Os08g0541400 |
| Description | peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 27090851-27093355 Nucleotide Length: 786 |
| Protein-coding | LOC_Os08g42850 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g14040 LOC_Os01g25600 LOC_Os05g22730 LOC_Os04g34460 LOC_Os01g71190 LOC_Os02g22260 LOC_Os03g52660 LOC_Os04g44440 LOC_Os02g42380 LOC_Os03g55930 LOC_Os04g44340 More.. |
| Downstream Genes | LOC_Os09g30410 LOC_Os10g35810 LOC_Os09g12290 LOC_Os12g34890 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g42850.1 |
| Rice Genome Annotation | LOC_Os08g42850.1 |
| Ricechip | LOC_Os08g42850.1 |
| KEGG | osa:4346192 dosa:Os08t0541400-01 |
| Entrez-Gene | 4346192 |