RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os08g43120.1 View Network Show in Genome Browser |
| Other Names | Os08g0544400 |
| Description | Plant PDR ABC transporter associated domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr8 CDS Coordinates (5'-3'): 27268083-27277540 Nucleotide Length: 3975 |
| Protein-coding | LOC_Os08g43120 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os08g25010 LOC_Os07g44710 LOC_Os02g32690 LOC_Os03g25070 LOC_Os02g16630 LOC_Os01g04260 LOC_Os04g52900 LOC_Os07g42770 LOC_Os03g59390 LOC_Os07g38120 LOC_Os05g39090 More.. |
| Downstream Genes | LOC_Os12g12860 LOC_Os09g16380 LOC_Os10g36710 LOC_Os09g33910 LOC_Os12g13720 LOC_Os11g37700 LOC_Os12g44150 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1881 |
| Database Links | |
|---|---|
| Gramene | LOC_Os08g43120.1 |
| Rice Genome Annotation | LOC_Os08g43120.1 |
| Ricechip | LOC_Os08g43120.1 |
| KEGG | osa:4346210 dosa:Os08t0544400-01 |
| Entrez-Gene | 4346210 |